PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17800.2.p
Common NameBRADI_5g17800, LOC100823737
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 569aa    MW: 58562 Da    PI: 6.3235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0001992110119
                       EEETTTTEEESSHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                       ++C++Cgk Fs+ +++  H
  Bradi5g17800.2.p  92 HVCKNCGKEFSSMDLFLDH 110
                       79*************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-51238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-51638No hitNo description
SMARTSM003552.71638IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4941643IPR007087Zinc finger, C2H2
PfamPF139120.0011738IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-587111No hitNo description
SMARTSM0035520092112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.82792119IPR007087Zinc finger, C2H2
SuperFamilySSF576678.97E-8260283No hitNo description
SMARTSM003550.77261283IPR015880Zinc finger, C2H2-like
PfamPF139122.8E-8261285IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034261288IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
SuperFamilySSF576678.97E-8390417No hitNo description
PROSITE profilePS501579.515395417IPR007087Zinc finger, C2H2
SMARTSM003550.62395417IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-12395418IPR007087Zinc finger, C2H2
PROSITE patternPS000280397417IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MLPWPPPPPQ ARPYKHFCRV CSKGFMCGSA LGGHMRTHAV SDGEPGAGAD DDDDDEPAVP  60
DAPWGPSSTS SPGTHVYALR ANLPNRLIRG CHVCKNCGKE FSSMDLFLDH GKCNSGEEGG  120
DGDAGGSLHS SPDPSVGDGD QEDASSLAAG WSKGKRSRRA KLIGSGEMLA MTSLDEPEEE  180
EDLANCLVML SSSSKADQPA RVADTNPEPC ASGTGKVHGR IMSQQPQPLA YVLPAPDPTM  240
VLPLALPAPQ HASAPIPRGM FECKACKKLF TSHQALGGHR ASHKKVKGCF AAKPESSVSA  300
SEPPHHAATL GGPNNEKSNA FAHAVVQVNV SSDADARTNY VDASTVGDRN DAGTSEAAEP  360
SLSMAIVTTG TADHEPPVVA LAPAVGSSKR KAKMHECSVC NRLFSSGQAL GGHKRCHWLT  420
SSTGEHGSIA PLRAEGLLGA AGYQLTLRPL VDAPEPELDL TIAANTSAGN SSLHLDTSAP  480
LYLQASAAPT SNNPSHQNKM AATSSHNVND AVGAGAAAEN EADSTASAKK ARLGGLKAVS  540
TTGETTPWLQ VGIGSSSADG DGKSTARE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581506.10.0PREDICTED: uncharacterized protein LOC100823737
TrEMBLA0A0Q3GSG80.0A0A0Q3GSG8_BRADI; Uncharacterized protein
STRINGBRADI5G17800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.14e-12C2H2 family protein